PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21484
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 378aa    MW: 42271.3 Da    PI: 8.2061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18205254255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+Wv+eIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  PEQU_21484 205 LYRGVRQRH-WGKWVSEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRG 254
                 59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.01E-33204262No hitNo description
Gene3DG3DSA:3.30.730.107.4E-32205262IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22205262IPR016177DNA-binding domain
PROSITE profilePS5103222.682205262IPR001471AP2/ERF domain
SMARTSM003809.4E-38205268IPR001471AP2/ERF domain
PfamPF008473.4E-11206254IPR001471AP2/ERF domain
PRINTSPR003677.0E-11206217IPR001471AP2/ERF domain
PRINTSPR003677.0E-11228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGGRKSGRG FHRGDVGDEI RKQKGKGKQV ERVGGLVMEK QTPDVPVFEE TQSPTSKSAF  60
RSLKKIRSPD RYSSAPATVT SSCSSRTILP FTYDSESVLI PHFQSIQPQQ QQQKPFFFDP  120
NQSFTIGSSS YTTPPPSLLL PKEALQQRYS EQLLKYWSEA LNLSPRGHMM MMSRLAAREN  180
RGRFPATFFR QPALFPGVNP TPTKLYRGVR QRHWGKWVSE IRLPRNRTRL WLGTFDTAED  240
AALAYDREAF KLRGKNARLN FPGLFIGEGL GSNSKDEDST SELTPLEVSK DNVSPPLENS  300
EAPVEVKPAE QSSVETEVVW SETEEAWFSA WGPGSSVWDD VDGVRNNLLF QSSFASLSAS  360
QSDCVHSTAF TGVDMETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20204262160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20204262463ATERF1
3gcc_A2e-20204262463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779564.12e-79PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLM0SS699e-70M0SS69_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P26080_0013e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-44ERF family protein